Contig spectrum analysis


Advanced interface
The advanced interface is for the custom analysis of any viral community and predictions about its:
  • structure: best relative abundance functional form and model's equation, and
  • diversity: richness, evenness, Shannon-Wiener index, relative abundance of the most abundant genotype.

    > Data

  • Contig spectrum:
    		•  ?
  • Avg. genome size (bp). Try GAAS!:
    		•      ?
  • Avg. fragment length (bp):
    		•      ?
  • Min. overlap length (bp):
    		•      ?

    > Computation

  • Rank-abundance distribution:
    		•  Power Exponential
    Logarithmic Lognormal
    Niche Preemption Broken Stick
    		?
  • Genotype range:
    		•  from to ?
  • Precision:
    		•  ?
  • Graphics:
    		•  Error curve
    Abundance curve
    Abundance curve (log scale)    		 ?

    Note: Depending on your analysis the computation can take a while. Please be patient!

    switch Switch to the basic interface if you don't know what to put in these fields.